Publications

Most papers have a link to a preprint version on their title and a link to the journal version on the journal name. Jump to Research articles, Books, Review papers, Book chapters, Conference proceedings, Popular science, Theses, Submitted and accepted manuscripts.

Research articles
  1. Chao-Ran Cai, Yuan-Yuan Nie, and Petter Holme, The nature of epidemic criticality in temporal networks, Phys. Rev. Res. 6, L022017 (2024).
  2. Yuan Bai, Zhanwei Du, Lin Wang, Eric H. Y. Lau, Isaac Chun-Hai Fung, Petter Holme, Benjamin J. Cowling, Alison P. Galvani, Robert M. Krug and Lauren Ancel Meyers, The public health impact of Paxlovid COVID-19 treatment in the United States, Emerg. Infect. Dis. 30, (2024) 262-269.
  3. Bin Zhou, Petter Holme, Zaiwu Gong, Choujun Zhan, Yao Huang, Xin Lu and Xiangyi Meng, The nature and nurture of network evolution, Nature Communications 14, 7031 (2023).
  4. Eric Yanchenko, Tsuyoshi Murata and Petter Holme, Link prediction for ex ante influence maximization on temporal networks, Applied Network Science 8, 70 (2023).
  5. Petter Holme, The toughness, elasticity, color, and consistency of cooperation, Physics of Life Reviews 43, 73-75 (2023).
  6. Zhizheng Wang, Xiao Fan Liu, Zhanwei Du, Lin Wang, Ye Wu, Petter Holme, Michael Lachmann, Hongfei Lin, Zhuoyue Wang, Yu Cao, Zoie S.Y. Wong, Xiao-Ke Xu and Yuanyuan Sun. Protocol for the automatic extraction of epidemiological information via a pre-trained language model. STAR Protocols 4, 102392 (2023).
  7. Fengyuan Liu, Petter Holme, Matteo Chiesa, Bedoor AlShebli and Talal Rahwan, Gender inequality and self-publication are common among academic editors, Nature Human Behavior 7, 353–364 (2023).
  8. Marcin Waniek, Petter Holme, Katayoun Farrahi, Remi Emonet, Manuel Cebrian and Talal Rahwan, Trading contact tracing efficiency for finding patient zero, Scientific Reports 12, 22582 (2022).
  9. Zhanwei Du, Qi Tan, Yuan Bai, Lin Wang, Benjamin J. Cowling, Petter Holme, Epidemic surveillance of influenza infections: A network-free strategy, China CDC Weekly 4, 1025-1031 (2022).
  10. Zhizheng Wang, Xiao Fan Liu, Zhanwei Du, Lin Wang, Ye Wu, Petter Holme, Michael Lachmann, Hongfei Lin, Zoie S. Y. Wong, Xiao-Ke Xu and Yuanyuan Sun, Epidemiologic information discovery from open-access COVID-19 case reports via pretrained language model, iScience 25, 105079 (2022).
  11. Marcin Waniek, Manuel Cebrian, Petter Holme and Talal Rahwan, Social diffusion sources can escape detection, iScience 25, 104956 (2022).
  12. Yuan Bai, Mingda Xu, Caifen Liu, Mingwang Shen, Lin Wang, Linwei Tian, Suoyi Tan, Lei Zhang, Petter Holme, Xin Lu, Eric H. Y. Lau, Benjamin J. Cowling and Zhanwei Du, Vital surveillances: Travel-related importation and exportation risks of SARS-CoV-2 Omicron variant in 367 prefectures, China CDC Weekly 4, 885-889 (2022).
  13. Marcin Waniek, Petter Holme and Talal Rahwan, Hiding in temporal networks, IEEE Trans. Netw. Sci. Eng. 9, 1645-1657 (2022).
  14. Franco Ruzzenenti, Francesco Picciolo, Petter Holme and Rossana Mastrandrea, Weighted network motifs as random walk patterns, New J. Phys. 24, 053056 (2022).
  15. Zhanwei Du, Yuan Bai, Lin Wang, Jose L Herrera-Diestra, Zhilu Yuan, Renzhong Guo, Benjamin J Cowling, Lauren Ancel Meyers and Petter Holme, Optimizing COVID-19 surveillance using historical electronic health records of influenza infections, PNAS Nexus 1, pgac038 (2022).
  16. Shupeng Gao, Lili Chang, Ivan Romić, Zhen Wang, Marko Jusup and Petter Holme, Optimal control of networked reaction–diffusion systems, J. Roy. Soc. Interface 18, 20210739 (2022).
  17. Boris Podobnik, Marko Jusup, Dean Korošak, Petter Holme and Tomislav Lipić, The microdynamics shaping the relation between democracy and corruption, Proc. R. Soc. A 478, 20210567 (2022).
  18. Luis E. C. Rocha, Petter Holme and Claudio D. G. Linhares, The global migration network of sex-workers, J. Comp. Soc. Sci. 5, 969-985 (2022).
  19. Fan Fang, Tong Wang, Suoyi Tan, Saran Chen, Tao Zhou, Wei Zhang, Qiang Guo, Jianguo Liu, Petter Holme, and Xin Lu, Network structure and community evolution online: Behavioral and emotional changes in response to COVID-19, Frontiers in Public Health 9, 2274 (2022).
  20. Dean Korošak, Marko Jusup, Boris Podobnik, Andraž Stožer, Jurij Dolenšek, Petter Holme, and Marjan Slak Rupnik, Autopoietic influence hierarchies in pancreatic β-cells, Phys. Rev. Lett. 127, 168101 (2021).
  21. Suoyi Tan, Petter Holme et al., Mobility in China, 2020: a tale of four phases, Natl. Sci. Rev. 8, nwab148 (2021).
  22. Charley Presigny, Petter Holme and Alain Barrat, Building surrogate temporal network data from observed backbones, Phys. Rev. E 103, 052304 (2021).
  23. Chao-Ran Cai, Zhi-Xi Wu and Petter Holme, Multistage onset of epidemics in heterogeneous networks, Phys. Rev. E 103, 032313 (2021).
  24. Soya Miyoshi, Marko Jusup and Petter Holme, Flexible imitation mechanisms suppress epidemics through better vaccination, J. Comp. Soc. Sci 4, 709-720 (2021).
  25. Petter Holme, Fast and principled simulations of the SIR model on temporal networks, PLOS One 16, e0246961 (2021).
  26. Chen Shen, Marko Jusup, Lei Shi, Zhen Wang, Matjaz Perc and Petter Holme, Exit rights open complex pathways to cooperation, J. Roy. Soc. Interface 18, 20200777 (2021).
  27. Xiu-Xiu Zhan, Ziyu Li, Naoki Masuda, Petter Holme and Huijuan Wang, Susceptible-infected-spreading-based network embedding in static and temporal networks, EPJ Data Science 9, 30 (2020).
  28. Lei Shi, Ivan Romić, Yongjuan Ma, Zhen Wang, Boris Podobnik, H. Eugene Stanley, Petter Holme and Marko Jusup, Freedom of choice adds value to public goods, Proc. Natl. Acad. Sci. USA 117, 17516-17521 (2020).
  29. Doina Bucur and Petter Holme, Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities, PLOS Comp. Biol. 16, e1008052 (2020).
  30. Boris Podobnik, Dean Korošak, Maša Skelin Klemen, Andraž Stožer, Jurij Dolenšek, Marjan Slak Rupnik, Plamen Ch. Ivanov, Petter Holme and Marko Jusup, β-cells operate collectively to help maintain glucose homeostasis, Biophysical Journal 118, 2588-2595 (2020).
  31. Zhanwei Du and Petter Holme, Coupling the circadian rhythms of population movement and the immune system in infectious disease modeling, PLOS One 15, e0234619 (2020).
  32. Bin Zhou, Xin Lu and Petter Holme, Universal evolution patterns of degree assortativity in social networks, Social Networks 63, 47–55 (2020).
  33. Naoki Masuda and Petter Holme, Small inter-event times govern epidemic spreading on temporal networks, Phys. Rev. Research 2, 023163 (2020).
  34. Petter Holme and Yérali Gandica, Free and freer XY models, Phys. Rev. E 101, 032311 (2020).
  35. Ewan Colman, Petter Holme, Hiroki Sayama and Carlos Gershenson, Efficient sentinel surveillance strategies for preventing epidemics on networks, PLOS Comp. Biol. 15, e1007517 (2019).
  36. Zhihai Rong, Zhi-Xi Wu, Xiang Li, Petter Holme and Guanrong Chen, Heterogeneous cooperative leadership structure emerging from random regular graphs, Chaos 29, 103103 (2019).
  37. Yi-Jiao Zhang, Zhi-Xi Wu, Petter Holme and Kai-Cheng Yang, Advantage of being multicomponent and spatial: Multipartite viruses colonize structured populations with lower thresholds, Phys. Rev. Lett. 123, 138101 (2019).
  38. Eun Lee, Sungmin Lee, Young-Ho Eom, Petter Holme and Hang-Hyun Jo, Impact of perception models on friendship paradox and opinion formation, Phys. Rev. E 99, 052302 (2019).
  39. Petter Holme and Luis E. C. Rocha, Impact of misinformation in temporal network epidemiology, Network Science 7, 52-69 (2019).
  40. Naoki Masuda and Petter Holme, Detecting sequences of system states in temporal networks, Scientific Reports 9, 795 (2019).
  41. Petter Holme and Liubov Tupikina, Epidemic extinction in networks: Insights from the 12,110 smallest graphs, New J. Phys. 30, 113042 (2018).
  42. Sang Hoon Lee and Petter Holme, Navigating temporal networks, Physica A 513, 288-296 (2019).
  43. Petter Holme, Objective measures for sentinel surveillance in network epidemiology, Phys. Rev. E 98, 022313 (2018).
  44. Mian Tan, Ling Fang, Yue Wu, Bo Zhang, Bowen Chang, Petter Holme and Jing Zhao, A fault-tolerant small world topology control model in ad hoc networks for search and rescue, Physics Letters A 382, 467-476 (2018).
  45. Mian Tan, Tinghong Yang, Xing Chen, Gang Yang, Guoqing Zhu, Petter Holme and Jing Zhao, A game-theoretic approach to optimize ad hoc networks inspired by small-world network topology, Physica A 494, 129-139 (2018).
  46. Minjin Lee, Hugo Barbosa, Hyejin Youn, Petter Holme and Gourab Ghoshal, Morphology of travel routes and the organization of cities, Nature Communications 8, 2229 (2017).
  47. Petter Holme, Three faces of node importance in network epidemiology: Exact results for small graphs, Phys. Rev. E 96, 062305 (2017).
  48. Luis E. C. Rocha, Naoki Masuda and Petter Holme, Sampling of temporal networks: Methods and biases, Phys. Rev. E 96, 052302 (2017).
  49. Petter Holme and Nelly Litvak, Cost-efficient vaccination protocols for network epidemiology, PLOS Comp. Biol. 13, e1005696 (2017).
  50. Jain Gu, Sungmin Lee, Jari Saramäki and Petter Holme, Ranking influential spreaders is an ill-defined problem, EPL 118, 68002 (2017).
  51. Eun Lee and Petter Holme, Social contagion with degree dependent thresholds, Phys. Rev. E 96, 012315 (2017).
  52. Yuan Bai, Bo Yang, Lijuan Lin, Jose L. Herrera, Zhanwei Du and Petter Holme, Optimizing sentinel surveillance in temporal network epidemiology, Scientific Reports 7, 4804 (2017).
  53. Eun Lee, Petter Holme and Sang Hoon Lee, Modeling the dynamics of dissent, Physica A, 486, 262–272 (2017).
  54. Kai-Cheng Yang, Zhi-Xi Wu and Petter Holme, Optimal migration in the expansion of cooperatively growing populations on networks, Phys. Rev. E 95, 012306 (2017).
  55. Guan-sheng Peng, Suo-yi Tan, Jun Wu and Petter Holme, Trade-offs between robustness and small-world effect in complex networks, Scientific Reports 6, 37317 (2016).
  56. Petter Holme, Temporal network structures controlling disease spreading, Phys. Rev. E 94, 022305 (2016).
  57. Emmanuel Andre, Petter Holme et al., Connectivity of diagnostic technologies: a public health good and necessity for TB elimination in the post-2015 era,Int. J. Tuberc. Lung Dis. 20, 999-1003 (2016).
  58. Heetae Kim, Sang Hoon Lee and Petter Holme, Building blocks of the basin stability of power grids, Phys. Rev. E 93, 062318 (2016).
  59. Chao-Ran Cai, Zhi-Xi Wu, Michael Z. Q. Chen, Petter Holme and Jian-Yue Guan, Solving the dynamic correlation problem of the susceptible-infected-susceptible model on networks, Phys. Rev. Lett. 116, 258301 (2016).
  60. Eun Lee and Petter Holme, Impact of mobility structure on the optimization of small-world networks of mobile agents, Eur. Phys. J. B 89, 143 (2016).
  61. Petter Holme and Hang-Hyun Jo, Collective decision making with a mix of majority and minority seekers, Phys. Rev. E 93, 052308 (2016).
  62. Jari Saramäki and Petter Holme, Exploring temporal networks with greedy walks, Eur. Phys. J. B 88, 334 (2015).
  63. Petter Holme, Connecting human behavior and infectious disease spreading, Physics of Life Reviews 15, 47-48 (2015).
  64. Heetae Kim, Sang Hoon Lee and Petter Holme, Community consistency determines the stability transition window of power-grid nodes, New. J. Phys. 17, 113005 (2015).
  65. Minjin Lee and Petter Holme, Relating land use and human intra-city mobility, PLOS One 10, e0140152 (2015).
  66. Petter Holme, Information content of contact-pattern representations and predictability of epidemic outbreaks, Scientific Reports 5, 14462 (2015).
  67. Heetae Kim and Petter Holme, Network theory integrated life cycle assessment for an electric power system, Sustainability 7, 10961-10975 (2015).
  68. Jing Zhao, Lili Miao, Jian Yang, Haiyang Fang, Qianmin Zhang, Min Nie, Petter Holme and Tao Zhou, Prediction of links and weights in networks by reliable routes, Scientific Reports 5, 12261 (2015).
  69. Petter Holme, Shadows of the susceptible-infectious-susceptible immortality transition in small networks, Phys. Rev. E 92, 012804 (2015).
  70. Petter Holme and Taro Takaguchi, Time evolution of predictability of epidemics on networks, Phys. Rev. E 91, 042811 (2015).
  71. Petter Holme and Naoki Masuda, The basic reproduction number as a predictor for epidemic outbreaks in temporal networks, PLOS One 10, e0120567 (2015).
  72. Anna Sircova, Fariba Karimi, Evgeny Osin, Sungmin Lee, Petter Holme and Daniel Strömbom, Simulating irrational human behavior to prevent resource depletion, PLOS One 10, e0117612 (2015).
  73. Jan Ohst, Fredrik Liljeros, Mikael Stenhem and Petter Holme, The network positions of methicillin resistant Staphylococcus aureus affected units in a regional healthcare system, EPJ Data Science 3, 29 (2014).
  74. Fariba Karimi, Veronica C. Ramenzoni and Petter Holme, Structural differences between open and direct communication in an online community, Physica A 414, 263-273 (2014).
  75. Hernan Mondani, Petter Holme and Fredrik Liljeros, Fat-tailed fluctuations in the size of organizations: the role of social influence, PLOS One 9, e100527 (2014).
  76. Petter Holme, Model versions and fast algorithms for network epidemiology, Journal of Logistical Engineering University 30, 1-7 (2014).
  77. Petter Holme and Fredrik Liljeros, Birth and death of links control disease spreading in empirical contact networks, Scientific Reports 4, 4999 (2014).
  78. Petter Holme, Extinction times of epidemic outbreaks in networks, PLOS One 8, e84429 (2013).
  79. Eun Lee and Petter Holme, Network characteristics of individual pigments in cyanobacterial photosystem II core complexes, Journal of the Korean Physical Society 63, 2255-2261 (2013).
  80. Taro Takaguchi, Naoki Masuda and Petter Holme, Bursty communication patterns facilitate spreading in a threshold-based epidemic dynamics, PLOS One 8, e68629 (2013).
  81. Petter Holme, Epidemiologically optimal static networks from temporal network data, PLOS Comp. Biol. 9, e1003142 (2013).
  82. Fariba Karimi and Petter Holme, Threshold model of cascades in empirical temporal networks, Physica A 392, 3476-3483 (2013).
  83. Jing Zhao, Sang Hoon Lee, Mikael Huss and Petter Holme, The network organization of cancer-associated protein complexes in human tissues, Scientific Reports 3, 1583 (2013).
  84. Sang Hoon Lee and Petter Holme, A greedy-navigator approach to navigable city plans, Eur. Phys. J. Spec. Top. 215, 135-144 (2013).
  85. Sang Hoon Lee and Petter Holme, Geometric properties of graph layouts optimized for greedy navigation, Phys. Rev. E, 86 067103 (2012).
  86. Jing Zhao, Jie Chen, Ting-Hong Yang and Petter Holme, Insights into the pathogenesis of axial spondyloarthropathy from network and pathway analysis, BMC Systems Biology 6, S4 (2012).
  87. Xin Lu, Linus Bengtsson and Petter Holme, Predictability of population displacement after the 2010 Haiti earthquake, Proc. Natl. Acad. Sci. USA 109, 11576-11581 (2012).
  88. Sungmin Lee, Luis E. C. Rocha, Fredrik Liljeros and Petter Holme, Exploiting temporal network structures of human interaction to effectively immunize populations, PLOS One 7, e36439 (2012).
  89. Sang Hoon Lee and Petter Holme, Exploring maps with greedy navigators, Phys. Rev. Lett. 108, 128701 (2012).
  90. Sang Hoon Lee, Sebastian Bernhardsson, Petter Holme, Beom Jun Kim and Petter Minnhagen, Neutral theory of chemical reaction networks, New J. Phys. 14, 033032 (2012).
  91. Sang Hoon Lee, Sungmin Lee, Seung-Woo Son and Petter Holme, Phase-shift inversion in oscillator systems with periodically switching couplings, Phys. Rev. E 85, 027202 (2012).
  92. Petter Holme, Social, sexual and economic networks of prostitution, Leonardo 45, 80-81 (2012).
  93. Sungmin Lee, Petter Holme and Zhi-Xi Wu, Cooperation, structure and hierarchy in multiadaptive games, Phys. Rev. E. 84, 061148 (2011).
  94. Jing Zhao, Ting-Hong Yang, Yongxu Huang and Petter Holme, Ranking candidate disease genes from gene expression and protein interaction: a Katz-centrality based approach, PLOS One 6, e24306 (2011).
  95. Petter Holme and Mikael Huss, Understanding and exploiting information spreading and integrating information technologies, Journal of Computer Science and Technology 26, 829-836 (2011).
  96. Sang Hoon Lee and Petter Holme, Pathlength scaling in graphs with incomplete navigational information, Physica A 390, 3996-4001 (2011).
  97. Zhi-Xi Wu and Petter Holme, Onion structure and network robustness, Phys. Rev. E 84, 026106 (2011).
  98. Petter Holme, Mikael Huss and Sang Hoon Lee, Atmospheric reaction systems as null-models to identify structural traces of evolution in metabolism, PLOS One 6, e19759 (2011).
  99. Luis E. C. Rocha, Fredrik Liljeros and Petter Holme, Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts, PLoS Comp. Biol. 7, e1001109 (2011).
  100. Petter Holme, Metabolic robustness and network modularity: A model study, PLOS One 6, e16605 (2011).
  101. Sungmin Lee, Petter Holme and Zhi-Xi Wu, Emergent hierarchical structures in multiadaptive games, Phys. Rev. Lett. 106, 028702 (2011).
  102. Sungmin Lee, Veronica C. Ramenzoni and Petter Holme, Emergence of collective memories, PLOS One 5, e12522 (2010).
  103. Petter Holme and Mikael Huss, Substance graphs are optimal simple-graph representations of metabolism, Chinese Sci. Bull. 55, 3161-3168 (2010).
  104. Zhi-Xi Wu and Petter Holme, Local interaction scale controls the existence of a non-trivial optimal critical mass in opinion spreading, Phys. Rev. E 82, 022102 (2010).
  105. Luis E. C. Rocha and Petter Holme, The network organization of consumer complaints, EPL 91, 28005 (2010).
  106. Luis E. C. Rocha, Fredrik Liljeros and Petter Holme, Information dynamics shape the sexual networks of Internet-mediated prostitution, Proc. Natl. Acad. Sci. USA 107, 5706-5711 (2010).
  107. Petter Holme, Beom Jun Kim and Viktoria Fodor, Heterogeneous attachment strategies optimize the topology of dynamic wireless networks, Eur. Phys. J. B 73, 597-604 (2010).
  108. Zhi-Xi Wu and Petter Holme, Majority-vote model on hyperbolic lattices, Phys. Rev. E 81, 011133 (2010).
  109. Fredrik Barrenas, Sreenivas Chavali, Petter Holme, Reza Mobini and Mikael Benson, Network properties of complex human disease genes identified through genome-wide association studies, PLOS One 4, e8090 (2009).
  110. Petter Holme, Zhi-Xi Wu and Petter Minnhagen, Multiscaling in an YX model of networks, Phys. Rev. E. 80, 036120 (2009).
  111. Zhi-Xi Wu and Petter Holme, Modeling scientific-citation patterns and other triangle-rich acyclic networks, Phys. Rev. E 80, 037101 (2009).
  112. Petter Holme, Model validation of simple-graph representations of metabolism, J. Roy. Soc. Interface 40, 1027-1034 (2009).
  113. Zhi-Xi Wu, Zhihai Rong and Petter Holme, Diversity of reproduction timescale promotes cooperation in spatial prisoner’s dilemma games, Phys. Rev. E 80, 036106 (2009).
  114. Zhi-Xi Wu and Petter Holme, Effects of strategy-migration direction and noise in the evolutionary spatial prisoner’s dilemma, Phys. Rev. E 80, 026108 (2009).
  115. Petter Holme, Signatures of currency vertices, J. Phys. Soc. Jpn. 78, 034801 (2009).
  116. Petter Holme, Josh Karlin and Stephanie Forrest, An integrated model of traffic, geography and economy in the Internet, Computer Communication Review 38, 7-15 (2008).
  117. Tao Zhou, Hoang Anh Tuan Kiet, Beom Jun Kim, Bing-Hong Wang and Petter Holme, Role of activity in human dynamics, Europhys. Lett. 82, 28002 (2008).
  118. Petter Holme and Mikael Huss, Comment on “Regularizing capacity of metabolic networks”, Phys. Rev. E 77, 023901 (2008).
  119. Andreas Grönlund, Petter Holme and Petter Minnhagen, Dynamic scaling regimes of collective decision making, Europhys. Lett. 81, 28003 (2008).
  120. Etsuko Nonaka and Petter Holme, Agent-based model approach to optimal foraging in heterogeneous landscapes: effects of patch clumpiness, Ecography 30, 777-788 (2007).
  121. Fredrik Liljeros, Johan Giesecke and Petter Holme, The contact network of inpatients in a regional health care system: A longitudinal case study, Mathematical Population Studies 14, 269-284 (2007).
  122. Mikael Huss and Petter Holme, Currency and commodity metabolites: Their identification and relation to the modularity of metabolic networks, IET Systems Biology 1, 280-285 (2007).
  123. Petter Holme and Jing Zhao, Exploring the assortativity-clustering space of a network’s degree sequence, Phys. Rev. E 75, 046111 (2007).
  124. Petter Holme, Josh Karlin and Stephanie Forrest, Radial structure of the Internet, Proc. R. Soc. A 463, 1231-1246 (2007).
  125. Petter Holme, Scale-free networks with a large- to hypersmall-world transition, Physica A 377, 315-322 (2007).
  126. Petter Holme and M. E. J. Newman, Nonequilibrium phase transition in the coevolution of networks and opinions, Phys. Rev. E 74, 056108 (2006).
  127. Petter Holme, Local symmetries in complex networks, Journal of the Korean Physical Society 50, 300-303 (2007).
  128. Petter Holme, Sung Min Park, Beom Jun Kim and Christofer R. Edling, Korean university life in a network perspective: Dynamics of a large affiliation network, Physica A 373, 821-830 (2007).
  129. Petter Holme, Detecting degree symmetries in networks, Phys. Rev. E 74, 036107 (2006).
  130. Gourab Ghoshal and Petter Holme, Attractiveness and activity in Internet communities, Physica A 354, 603-609 (2006).
  131. Petter Holme and Gourab Ghoshal, Dynamics of networking agents competing for high centrality and low degree, Phys. Rev. Lett. 96, 098701 (2006).
  132. E. A. Leicht, Petter Holme and M. E. J. Newman, Vertex similarity in networks, Phys. Rev. E 73, 026120 (2006).
  133. Andreas Grönlund and Petter Holme, A network-based threshold model for the spreading of fads in society and markets, Advances in Complex Systems 8, 261-273 (2005).
  134. Petter Holme, Core-periphery organization of complex networks, Phys. Rev. E 72, 046111 (2005).
  135. Petter Holme and Mikael Huss, Role-similarity based functional prediction in networked systems: Application to the yeast proteome, J. R. Soc. Interface 2, 327-333 (2005).
  136. Petter Holme and Andreas Grönlund, Modelling the dynamics of youth subcultures, Journal of Artificial Societies and Social Simulation 8, 3 (2005).
  137. Petter Holme, Network reachability of real-world contact sequences, Phys. Rev. E 71, 046119 (2005).
  138. Petter Holme, Efficient local strategies for vaccination and network attack, Europhys. Lett. 68, 908-914 (2004).
  139. Sung Min Park, Petter Holme and Beom Jun Kim, 수강신청 자료를 이용한 아주대학교 학생들의 그물얼개 연구 [Student network in Ajou University based on the course registration data], Sae Mulli 49, 399-405 (2004). (In Korean.)
  140. Andreas Grönlund and Petter Holme, The networked seceder model: Group formation in social and economic systems, Phys. Rev. E 70, 036108 (2004).
  141. Petter Holme, Network dynamics of ongoing social relationships, Europhys. Lett. 64, 427-433 (2003).
  142. Petter Holme, Ala Trusina, Beom Jun Kim and Petter Minnhagen, Prisoners’ dilemma in real-world acquaintance networks: Spikes and quasi-equilibria induced by the interplay between structure and dynamics, Phys. Rev. E 68, 030901(R) (2003).
  143. Petter Holme, Christofer R. Edling and Fredrik Liljeros, Structure and time-evolution of an Internet dating community, Social Networks 26, 155-174 (2004).
  144. Petter Holme, Congestion and centrality in traffic flow on complex networks, Advances in Complex Systems 6, 163-176 (2003).
  145. Kateryna Medvedyeva, Petter Holme, Petter Minnhagen and Beom Jun Kim, Dynamic critical behavior of the XY model in small-world networks, Phys. Rev. E 67, 036118 (2003).
  146. Petter Holme, Fredrik Liljeros, Christofer R. Edling and Beom Jun Kim, Network bipartivity, Phys. Rev. E 68, 056107 (2003).
  147. Petter Holme, Mikael Huss and Hawoong Jeong, Subnetwork hierarchies of biochemical pathways, Bioinformatics 19, 532-538 (2003). See also the project’s homepage.
  148. Petter Holme, Edge overload breakdown in evolving networks, Phys. Rev. E 66, 036119 (2002).
  149. Beom Jun Kim, Ala Trusina, Petter Holme, Petter Minnhagen, Jean S. Chung and M. Y. Choi, Dynamic instabilities induced by asymmetric influence: Prisoners’ dilemma game in small-world networks, Phys. Rev. E 66, 021907 (2002).
  150. Petter Holme and Beom Jun Kim, Vertex overload breakdown in evolving networks, Phys. Rev. E 65, 066109 (2002).
  151. Petter Holme, Beom Jun Kim, Chang No Yoon and Seung Kee Han, Attack vulnerability of complex networks, Phys. Rev. E 65, 056109 (2002).
  152. Petter Holme and Beom Jun Kim, Growing scale-free networks with tunable clustering, Phys. Rev. E 65, 026107 (2002).
  153. Beom Jun Kim, H. Hong, Petter Holme, Gun Sang Jeon, Petter Minnhagen and M. Y. Choi, XY model in small world networks, Phys. Rev. E 64, 056135 (2001).
  154. Petter Holme and Peter Olsson, A zero-temperature study of vortex mobility in two-dimensional vortex glass models, Europhys. Lett. 60, 439-445 (2002).
  155. Petter Holme, Beom Jun Kim and Petter Minnhagen, Phase transitions in the two-dimensional random-gauge XY model, Phys. Rev. B 67, 104510 (2003).
  156. Peter Olsson and Petter Holme, Transition in the two-dimensional step model: A Kosterlitz-Thouless transition in disguise, Phys. Rev. B 63, 052407 (2000).
  157. Peter Olsson and Petter Holme, Comment on “Structure and phase transition of Josephson vortices in anisotropic high-Tc superconductors”, Phys. Rev. Lett. 85, 2651 (2000).
Books
  1. Petter Holme and Jari Saramäki, eds., Temporal Network Theory (Springer, Cham, 2019).
  2. Naoki Masuda and Petter Holme, eds., Temporal Network Epidemiology (Springer Nature, Singapore, 2017).
  3. Petter Holme and Jari Saramäki, eds., Temporal Networks (Springer, Berlin, 2013).
Review papers
  1. Petter Holme and Juan C. Rocha, Networks of climate change: Connecting causes and consequences, Applied Network Science 8, 10 (2023).
  2. Marko Jusup, Petter Holme, et al., Social physics, Phys. Rep. 948, 1 (2022).
  3. Naoki Masuda, Joel C. Miller and Petter Holme, Concurrency measures in the era of temporal network epidemiology: A review, J. Roy. Soc. Interface 18, 20210019 (2021).
  4. Petter Holme, Modern temporal network theory: A colloquium, Eur. Phys. J. B 88, 234 (2015).
  5. Petter Holme and Fredrik Liljeros, Mechanistic models in computational social science, Front. Phys. 3, 78 (2015).
  6. Petter Holme, Analyzing temporal networks in social media, Proc. IEEE 102, 1922-1933 (2014).
  7. Naoki Masuda and Petter Holme, Predicting and controlling infectious disease epidemics using temporal networks, F1000Prime Rep. 5, 6 (2013).
  8. Petter Holme and Jari Saramäki, Temporal networks, Phys. Rep. 519, 97-125 (2012).
Book Chapters
  1. Patrik Seiron, Axel Lindegren, Matteo Magnani, Christian Rohner, Tsuyoshi Murata and Petter Holme, Modularity-based selection of the number of slices in temporal network clustering, in Temporal Network Theory (2nd ed.), Petter Holme and Jari Saramäki, eds., (Springer, Cham, 2023), pp. 435-447.
  2. Yueran Duan, Qing Guan, Petter Holme, Yacheng Yang and Wei Guan, Temporal link prediction methods based on behavioral synchrony, in Temporal Network Theory (2nd ed.), Petter Holme and Jari Saramäki, eds., (Springer, Cham, 2023), pp. 381–402.
  3. Petter Holme and Jari Saramäki, A map of approaches to temporal networks, in Temporal Network Theory, Petter Holme and Jari Saramäki, eds., (Springer, Cham, 2019), pp. 1-24.
  4. Petter Holme, Probing empirical contact networks by simulation of spreading dynamics, in Complex Spreading Phenomena in Social Systems: Influence and Contagion in Real-World Social Networks, Sune Lehmann and Yong-Yeol Ahn, eds., (Springer, Cham, 2018), pp. 109-124.
  5. Petter Holme and Luis E. C. Rocha, Sensitivity to temporal and topological misinformation in predictions of epidemic outbreaks, in Temporal Network Epidemiology, Naoki Masuda and Petter Holme, eds., (Springer Nature, Singapore, 2017), pp 43-55.
  6. Naoki Masuda and Petter Holme, Introduction to temporal network epidemiology, in Temporal Network Epidemiology, Naoki Masuda and Petter Holme, eds., (Springer Nature, Singapore, 2017), pp 1-16.
  7. Luis E. C. Rocha, Fredrik Liljeros and Petter Holme, Sexual and communication networks of Internet-mediated prostitution, in The Oxford Handbook of the Economics of Prostitution, Scott Cunningham and Manisha Shah, eds., (Oxford University Press, Oxford), pp. 57-97 (2016).
  8. Petter Holme, Temporal networks, in Encyclopedia of Social Network Analysis and Mining, Reda Alhajj and Jon Rokne, eds., (Springer, Berlin, 2014), pp. 2119-2128.
  9. Petter Holme and Jari Saramäki, Temporal networks as a modeling framework, in Temporal Networks, Petter Holme and Jari Saramäki, eds., (Springer, Berlin, 2013), pp. 1-14.
  10. Fariba Karimi and Petter Holme, A temporal network version of Watts’s cascade model, in Temporal Networks, Petter Holme and Jari Saramäki, eds., (Springer, Berlin, 2013), pp. 315-330.
  11. Petter Holme and Gourab Ghoshal, The diplomat’s dilemma: Maximal power for minimal effort in social networks, in Adaptive networks: Theory, models and applications, Thilo Gross and Hiroki Sayama, eds., (Springer, Berlin, 2009), pp. 269-288.
  12. Petter Holme, Efficiency of navigation in indexed networks, in Dynamics on and of networks. Niloy Ganguly, Animesh Mukherjee and Andreas Deutsch, eds., (Birkäuser, Basel, 2009), pp. 189-198.
Conference Proceedings
  1. Petter Holme, Representations of human contact patterns and outbreak diversity in SIR epidemics, IFAC-PapersOnline 48, 127-131 (2015).
  2. Petter Holme, The social, economic and sexual networks of prostitution, Proceedings of the 23rd International Conference on World Wide Web, 1259-1260 (2014).
  3. Eun Lee and Petter Holme, 동적 무선 네트워크에서 이동 패턴이 소모 전력에 미치는 영향 [The effect of mobility patterns on power-consumption in dynamic wireless networks], 2014 한국복잡계학회 학술대회 [Proceedings of the Korea Academy of Complexity Studies Annual Meeting 2014] (KACS, Seoul, 2014), pp. 245-254. (In Korean.)
  4. Heetae Kim and Petter Holme, 전력망의 네트워크 구조를 고려한 전기 에너지의 환경 영향 평가 [Environmental assessment of electric power grid considering network structure], 2014 한국복잡계학회 학술대회 [Proceedings of the Korea Academy of Complexity Studies Annual Meeting 2014] (KACS, Seoul, 2014), pp. 255-265. (In Korean.)
  5. Minjin Lee and Petter Holme, 개인 일상이동패턴과 토지이용도를 이용한 도시 유동성 추정 [Prediction of intra-human mobility using individual daily life pattern and land-use information], 2014 한국복잡계학회 학술대회 [Proceedings of the Korea Academy of Complexity Studies Annual Meeting 2014] (KACS, Seoul, 2014), pp. 277-286. (In Korean.)
  6. Jing Zhao, Jie Chen, Ting-Hong Yang and Petter Holme, Pathogenesis of axial spondyloarthropathy in a network perspective, IEEE Conference on Systems Biology (ISB), 42-46 (2011).
  7. Jing Zhao and Petter Holme, Three faces of metabolites: pathways, localizations and network positions, Lecture Notes in Operations Research 13, 13-21 (2010).
  8. Petter Holme and Mikael Huss, Discovery and analysis of biochemical subnetwork hierarchies, 3rd Workshop on Computation of Biochemical Pathways and Genetic Networks, R. Gauges, U. Kummer, J. Pahle and U. Rost, eds., European Media Lab Proceedings (Logos, Berlin, 2003), pp. 3-9.
Popular Science
  1. Petter Holme, Universality out of order, Nature Communications 13, 2355 (2022).
  2. Petter Holme, Mason A. Porter and Hiroki Sayama, Who is the most important character in Frozen? What networks can tell us about the world, Frontiers for Young Minds 7, 99 (2019).
  3. Petter Holme, Rare and everywhere: Perspectives on scale-free networks, Nature Communications 10, 1016 (2019).
  4. Petter Holme, Utbrotten av aktivitet och vårt förutsägbara beteende [Bursts of activity and our predictable behavior], Framtider, 24-26 (2012). (In Swedish.)
  5. Petter Holme, Hur står det till med dina dynamiska nätverk? [What’s up with your temporal networks?], Thule 2011 (Royal Skyttean Society, Umeå, 2011), pp. 111-122. (In Swedish.)
  6. Petter Holme and Martin Rosvall, Komplexa system och nätverksfysik: Om hur saker hänger ihop ger andra saker deras egenskaper [Complex networks and network physics: On how things are connected give other things their properties], Kosmos 2009 (Swedish Physics Society, Uppsala, 2010), pp. 85-98. (In Swedish.)
Theses
  1. Petter Holme, Form and Function of Complex Networks (Umeå University, Umeå, 2004). (PhD Thesis.)
  2. Petter Holme, Physics of Two-Dimensional Vortex Glass Models (Umeå University, Umeå, 2001). (Licentiate Thesis.)
Submitted and accepted manuscripts
  1. Chuchu Liu, Petter Holme, Sune Lehmann, Wenchuan Yang, and Xin Lu, Underrepresented in the polulation flow.
  2. Xin Lu, Jianhon Mou, Bitao Dai, Suoyi Tan, Petter Holme, Sune Lehmann and Fredrik Liljeros, The spindle approximation of network epidemiological modeling.
  3. Eric Yanchenko, Tsuyoshi Murata and Petter Holme, Influence maximization on temporal networks: a review.
  4. Xiu-Xiu Zhan, Chuang Liu, Zhipeng Wang, Huijuang Wang, Petter Holme and Zi-Ke Zhang, Measuring and utilizing temporal network dissimilarity.
  5. Xin Lu, Shuo Qin, Petter Holme, Fanhui Meng, Yanqing Hu, Fredrik Liljeros and Gad Allon, Beyond the coverage of information spreading: Analytical and empirical evidence of re-exposure in large-scale online social networks.
  6. Zhanwei Du, Spencer J. Fox, Petter Holme, Jiming Liu, Alison P. Galvani and Lauren Ancel Meyers, Periodicity in movement patterns shapes epidemic risk in urban environments.
  7. Zhanwei Du, Chao Gao, Yuan Bai, Yongjian Yang and Petter Holme, Urban contact structures for epidemic simulations: Correcting biases in data-driven approaches.
  8. Hyewon Jang, Petter Holme and Minsu Ha, Ill-defined problem solving: Diversity of paths and similarity of strategy selection.
  9. Juan Ignacio Perotti, Hang-Hyun Jo, Petter Holme and Jari Saramäki, Temporal network sparsity and the slowing down of spreading.